ea! enrichment analysis in oligo probes
use a file with probes agilent or affymetrix codes or paste in the text area (p.ej:A_23_P214222 or 200017_at )
EA use GOstat and topGO bioconductor packages
Implemented by Juanjo Lozano (CRG-Microarray core)
upload your genelist
sample
Or paste your genelist
sample
Association database
GO-CellComponent
GO-BiolProcess
GO-MolecFunc
Enrichment p-value threshold
0.05
0.01
1
0.001
0.005
Your chip is
HumAgilent22K_V2
HumAgilent44K
MouAgilent44K
MouAgilent22K
RatAgilent22K
RatAgilent44K
HumAffyHGU133plus2
HumHGU133a2
HumAffyHGU133
HumAffyHGU133_2
mouse4302
moe430a
HumHGfocus
zebrafish
illuminaHumanv2
illuminaMousev1
illuminaRatv1
OperonHumanV4
BreastChip4
ExonIM
BKTDPKL
Run Alexa TopGO algorithm
no
yes
In beta and Slow!!!
1
Reference:
GOstat
,
topGO
Problems and comments
Juanjo Lozano
Interesting webserver links for data analysis
GO tools
free!
DAVID
free!
Ingenuity
Trial for a few days
Pubgene
free!
Webgestalt
Cytoscape
Reactome