A
MA
R
GE
QC analysis and calculation of Affy chips expression values
AMARGE
Choose method to compute expression values
rma
gcrma
dchip
Compressed file (zip,tar.gz or .tgz) with cel's:
Example
What's your CDF
mouse4302
hgu133a
hgu133b
hgu133a2
hgu133plus2
hgu95av2
hgfocus
hu6800
rgu34a
mgu74a
mgu74av2
moe430a
rae230a
zebrafish
chickencdf
hsex10stv2hsug7cdf
hsex10stv2hsenst7cdf
hsex10stv2hsrefseq7cdf
Expresion values are in log2 form ?
yes
no
Generate MAS5 info ?(this option require more MUCH time)
no
yes
Compute only expresion values
no
yes
IMPORTANT NOTE:
at the moment only
50
celfiles are allowed
Problems and comments
Juanjo Lozano